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Species belonging to selected taxon:

Picea sitchensis



ABOUT THIS RECORD

ID: MNEST002003
species: Picea sitchensis
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTGGATTGAAGGGAGCTCCT

miRNA*
GCGCTTCCTTCAACCCAATAA

mismatches: 2
bulges: 0

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pre-miRNA
AAAGAAGCAAGAGCTGACGGGGCGCTTCCTTCAACCCAATAAATGGCTGTGTAGGGATGATTCAACTGCTGGTTCATGGATTCTATTACATTGTCACGTT
GCTGGAGCTATTTTTCGTGGCAAGATAATGGTGTGCATGGCACAGGAGTTGGAATGCCACTATGCGGCGTTATATTGGATTGAAGGGAGCTCCTCGCAGG
CCTCGTGCTGGA


dot-bracket secondary structure
.....((((.(((((..(((((.(((((((((((.((((((....(((((((((((.((.(((((((.(((..(((((.((.((((((..((((((((..
((....)).......))))))))..)))))).)).)))))..))).))))))).)))).)))))))))....)))))).))))))))))).)))))..))
.))).))))...



SIMILARITIES
miRBase pta-MIR159b: 0.0000000007

PMRD pta-miR159b: 0.0000000007

microPC miR159: 0.0000000007
UniProt no hits

RFAM MIR159: 0.0008
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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